PyMOL - Molecular Graphics System

This is a fully ready-to-use molecular visualization (molecular imaging) system for use in structural biology.
It allows to create high-quality three-dimensional images of both small molecules and biological macromolecules, primarily proteins.
About a quarter of all published images of protein structures in the scientific literature are made with PyMOL.

Features include:

  • Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals;
  • Molecular builder and sculptor;
  • Internal raytracer and movie generator;
  • Fully extensible and scriptable via a Python interface.

File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps.

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